Tuesday, November 30, 2021

High-Throughput Screening Identifies a Rhodopsin Dimer Enhancer Candidate, GPCRs Studied

Article: High-throughput screening provides insight into functional role of key G protein-coupled receptor (GPCR) rhodopsin (Rh)
Source: University of California, Irvine, Medicine
Published: November 16, 2021

Effect of compound #1, a rhodopsin dimer enhancer candidate, on
rod photoreceptor light responses, as measured in mouse retina cell
s
The transduction of light in the eye's rod photoreceptors relies on G protein-coupled receptors (GPCR) called rhodopsins (Rh), which are the visual pigments in rod photoreceptors. Researchers at UC Irvine sought to study rhodopsin oligomerization, or self-aggregation, and its effect on the rhodopsin G protein-coupled signaling cascade. They performed high-throughput screening on a diverse library of 50,000 small molecules, including a novel assay to detect rhodopsin dimerization. This screening method identified nine small molecules that either disrupted or enhanced rhodopsin dimer contacts in vitro. One of the compounds (hit compound #7) "significantly slowed down the light response kinetics of intact rods," while another compound (hit compound #1) "cause a significant reduction in light sensitivity." Subsequent free-cell binding analysis showed spectra profiles that are consistent with all nine compounds being allosteric modulators. The authors report "the discovery of new allosteric modulators of rhodopsin dimerization that can also alter rod photoreceptor physiology" and new tools for studying the rhodopsin signaling cascade. Because G protein-coupled receptors (including opioid and adrenergic receptors) mediate a variety of physiological functions, studying these receptors can add to knowledge about how they serve as therapeutic targets for a wide range of diseases. They state that next steps include applying medicinal chemistry to improve the pharmacological properties of the identified compounds.

My rating of this study:  

Getter T, Kemp A, Vinberg F, et al. "Identification of small-molecule allosteric modulators that act as enhancers/disrupters of rhodopsin oligomerization." Journal of Biological Chemistry.  297(6):101401. December 2021. https://doi.org/10.1016/j.jbc.2021.101401 

Monday, November 29, 2021

Regions in the Infant Brain are Selective for Visual Targets, such as Faces, at as Early as Two Months

Article: A key brain region responds to faces similarly in infants and adults
Source: Massachusetts Institute of Technology
Published: November 15, 2021 

Stereotyped location of the fusiform face area (FFA) in
the infant brain, similar to location as in the adult brain

The prevailing train of thought among neuroscientists is that it takes several years of visual experience for regions in the developing brain to gradually become selective for their specific targets, whether they be faces, body parts, scenes, etc. This hypothesis had been in part due to difficulties in scanning the brains of younger subjects, such as infants, with the same high-resolution imaging that is conducted for adult subjects. Researchers at MIT built a specialized fMRI scanner and protocols that were both more comfortable for babies (such as custom headphones) as well as provided greater power with an adjustable 32-channel coil, at similar imaging resolution as that found in fMRI used to study adult brains. They then recruited nearly 90 babies for the study, ranging in age from two to nine months. Usable data was collected for 52 of the infants, a higher number than any research lab had been able to scan previously. Half of these infants also contributed higher-resolution data. The findings revealed that specific regions of the infant visual cortex show highly selective responses to faces, body parts, and natural scenes, in the same locations where those responses are seen in the adult brain. The cortical areas studied for processing faces included the fusiform face area (FFA), the occipital face area (OFA), and the anterior temporal lobe (ATL); however, only the FFA showed statistically significant selective responses in the infant brain. First author of the study comments, "A lot of theories have grown up in the field of visual neuroscience to accommodate the view that you need years of development for these specialized regions to emerge. And what we're saying is actually, no, you only really need a couple of months." In terms of the fusiform face area in particular, the researchers plan to further investigate how development progresses from the youngest babies they studied to the oldest. These results also help to inform our understanding of brain development in general, for example, how the brain "builds" sets of functionally distinct regions in more or less the same location in each individual person.

My rating of this study:

Kosakowski HL, Cohen MA, Takahashi A, et al. "Selective responses to faces, scenes, and bodies in the ventral visual pathway of infants." Current Biology.  15 November 2021. https://doi.org/10.1016/j.cub.2021.10.064

Retinal Imaging to Detect Alzheimer's Disease Risk

Article: Eyes Provide Peek at Alzheimer’s Disease Risk
Source: University of California, San Diego, Medicine
Published: August 23, 2021

Amyloid deposits tagged by curcumin fluorescence in a retinal scan
The vasculature of the retina and its exposure as an extension of the brain allow the eyes to be an excellent organ for monitoring of neurological and systemic diseases. The ability to visibly access the retina via noninvasive imaging techniques opens a valuable window for evaluation of neurological pathologies by retinal fundus imaging, especially as an early biomarker to assess disease risk. Researchers at UC San Diego conducted a cross-sectional pilot study investigating the feasibility of detecting amyloid plaques, a hallmark of Alzheimer's disease, in the retina in the context of clinical trials. Specifically, they analyzed the Anti-Amyloid Treatment in Asymptomatic Alzheimer's Disease (A4) trial, a nationwide clinical trial exploring ways to reduce or prevent the formation of beta-amyloid deposits in neural tissue. The researchers compared retinal and cerebral amyloid in clinically normal individuals who screened positive for high amyloid levels through positron emission tomography (PET). Additionally, the researchers looked at the Longitudinal Evaluation of Amyloid Risk and Neurodegeneration (LEARN) study, which comprises a cohort of individuals who exhibited low levels of amyloid on PET. The authors report, "The four participants from the A4 trial showed a greater number of retinal spots compared to the four participants from the LEARN study. We observed a positive correlation between retinal spots and brain amyloid, as measured by the standardized uptake value ratio (SUVr)." The researchers acknowledge the limitations of the small pilot dataset of only eights patients, adding that "these findings are encouraging because they suggest it may be possible to determine the onset, spread and morphology of AD—a preclinical diagnosis—using retinal imaging, rather than more difficult and costly brain scans." They look forward to larger studies, both cross-sectionally and longitudinally.

My rating of this study:

Ngolab J, Donohue M, Belsha A, et al. "Feasibility study for detection of retinal amyloid in clinical trials: The Anti-Amyloid Treatment in Asymptomatic Alzheimer's Disease (A4) trial." Alzheimer's & Dementia.  17 August 2021. https://doi.org/10.1002/dad2.12199

Saturday, November 27, 2021

Week in Review: Number 42

Optical Illusion Combines Phi Phenomenon and Oscillating High Contrast Patterns
A new optical illusion is making its rounds for the enjoyment of netizens. The original version, which first appeared in 2020 and attributed to Japanese digital artist Jagarikin, displays a pair of rotating blue-and-yellow circles each encompassing one or four arrows that change directions, with the direction that the arrows point to influencing the perception of the forward motion of the circles. Other variations of the illusion have been created since then, including a black and white version and a version in rainbow colors. (A variation using Necker cubes also seems to be related.) The latest version in rainbow colors has been dissected by viewers to demonstrate, for example, that the illusion persists even when the arrows are removed and that the circles are indeed stationary. For cognitive—in addition to visual—entertainment, curious observers have also investigated the underlying properties that give the illusion its effect. The first is the phi phenomenon, which most of us are familiar with in the form of animated films. In its simplest instantiation, spots moving in succession in the form of a circle create the illusion of forward motion. (In a related phenomenon, called the reverse phi phenomenon, if the second point becomes light rather than dark, then we perceive the motion as moving in the opposite or reverse direction.) Other elements of the optical illusion perhaps include the Müller-Lyer illusion (as seen in a star formation here), wherein varying the direction of arrowheads influences the perception of length. (Additionally, the version in black and white seems to make use of the barberpole illusion.) And finally, it has been noted (in still frame) that each circle is flanked by inner and outer edges with colors that contrast with the body of the circle. The high contrast suggests that the subtleties of the illusion also rely on oscillating positive-negative patterns, for example as seen in two-stroke or four-stroke apparent motion. For both visual and cognitive reasons, optical illusions provide a perplexing but fun reminder of the complex, and sometimes inaccurate, ways in which our visual systems represent the world we see.

Eye-Tracking Software Developed for fMRI
Viewing behavior can provide meaningful information about neurological health. As such, eye-tracking technology can be clinically relevant in the diagnosis and management of neurological injury. Typically, this eye-tracking comes in the form of sensor technology, in which infrared light is projected onto the retina, reflected, and then measured by the sensor. Although functional magnetic resonance imaging (fMRI) is the gold standard of functional brain imaging, MRIs use strong magnets and integrating MRI-compatible camera systems often comes at a high cost. This has thus far prevented the widespread use of eye-tracking in MRI exams. Researchers at the Max Planck Institute in Germany sought to improve upon eye-tracking availability by directly applying software to fMRI. These researchers developed a software called DeepMReye, a convolutional neural network (CNN) that decodes gaze position from the magnetic resonance signal of the eyeballs. Notable features of this technology include the fact that it performs cameraless eye-tracking during an fMRI scan, and works even in existing datasets and when the eyes are closed. First author of the study explains, "The neural network we use detects specific patterns in the MRI signal from the eyes. This allows us to predict where the person is looking." The software is trained on both publicly available data and study participants to now be able to perform eye-tracking on data that it was not trained on, such as existing MRI imaging that was previously acquired without eye-tracking. Because the software can predict eye movements even when the eyes are closed, it can facilitate studies of individuals in a sleeping state or of individuals who are blind. In the latter case, the researchers remark that whereas traditional eye-tracking has suffered from calibration difficulties in blind patients, "Here too, studies can be carried out more easily with DeepMReye, as the artificial intelligence can be calibrated with the help of healthy subjects and then be applied in examinations of blind patients." They have made the DeepMReye software an open source application for other researchers to use in the hopes of making eye-tracking more widespread in MRI examinations.

Drusen Formation Linked to Extracellular Vesicle Release by RPE Cells
Drusen are deposits that accumulate under the retina, between the retinal pigmented epithelium (RPE) and Bruch's membrane of the underlying choriocapillaris (of the choroid). The accumulation of drusen signals the, often age-related, decline in RPE function in recycling and maintaining photoreceptor health, leading to retinal diseases such as age-related macular degeneration (AMD). Researchers have for the first time observed evidence of RPE cells releasing exosomes that contain both normal proteins and proteins that are associated with drusen. This occurs in normal physiological conditions, and is increased 20 times under conditions of cellular stress. Moreover, the secretion of extracellular vesicles (EVs) by the RPE cells exhibited polarity or directionality. The authors write, "Notably, drusen-associated proteins exhibited distinctive directional secretion modes in homeostatic conditions and, differential modulation of this directional secretion in response to AMD stressors." For example, when treated with cigarette smoke extract (CSE) as a stressor and known risk factor for AMD, the RPE cells exhibited notably increased release of EVs from their apical surface compared to their basal surface. The RPE and Bruch's membrane share an apex-to-apex attachment, due to involution of the optic cup during development. The researchers suggest that these drusen-associated proteins could provide an early biomarker of AMD. First author of the study remarks, "Knowing that extracellular vesicles are releasing drusen-associated proteins presents an opportunity for novel diagnostic and therapeutical approaches. If we can define assays to measure these proteins released in these exosomes, we could potentially diagnose the disease early." Senior researcher of the project adds, "If we understand how drusen form and what cells or mechanisms contribute to their formation, we may be able to control the formation of drusen and slow down or even, perhaps prevent, some of the pathological events leading to AMD." They conclude, "Collectively, our results strongly support an active role of RPE-derived EVs as a key source of drusen proteins and important contributors to drusen development and growth."

Retinoids Explored as Treatment for Usher Syndrome
Usher syndrome type 1F (USH1F) is characterized by deafness, progressive retinal degeneration, and vestibular areflexia. Its prevalance is highest among Ashkenazi Jews, with carrier genes accounting for roughly 60% of their Usher syndrome type 1 cases. Thus far, there is no treatment for the disease. In the 2000s, a few scientists began collecting data about the natural history of USH1F disease progression, enrolling 13 participants with USH1F to follow the natural progression of their accompanying blindness over 20 or more years. This longitudinal phenotyping revealed progressive retinal degeneration leading to severe vision loss with macular atrophy by the sixth decade, with half of the individuals being legally blind by their mid-50s. Simultaneously, other scientists were working on a mouse model of an Usher syndrome variant found in 13 of the patients in the natural history project. The most recent work combined the research findings that had been independently collected in the human subjects and the mouse models. The collaboration led to new discoveries, such as identifying the function of a previously identified gene, PCDH15, that leads to a shortened version of the protein protocadherin-15 (mutation Pcdh15R250X). They found that protocadherin-15 helps light-dark cycle proteins move back and forth between the different compartments of the eye's photoreceptors, and is required in recycling of retinoids by the retinal pigmented epithelium (RPE). Reduced levels of retinoid cycle proteins (RPE65 and CRALBP) were found in mice with USH1F mutation. Next, the researchers explored whether supplementing retinoids would improve vision in these mice. They report that "[e]xogenous 9-cis retinal improved ERG amplitudes in Pcdh15R250X mice." One of the researchers remarks, "There are currently FDA-approved relatives of these retinoid drugs that are available and have passed clinical trials for safety, along with others that are in Phase II clinical trials to treat other types of vision loss disorders." They hope to test these drugs in clinical trials. Although the drugs will not recover lost vision, they might help Usher syndrome patients with function of the retinal tissue that they still have.

A Shared Neural Code for Recognizing Familiar Faces

The ability to recognize familiar faces is important in shaping social interaction. Scientists wondered whether there is a shared neural code for recognition of visually and personally familiar faces across the brains of individuals who know each other. The study recruited 14 graduate students from the same PhD program (who had known each other for at least two years) and obtained fMRI data of their brain activity in three sessions. The researchers used two methods to study face and identity perception: hyperalignment and between-subject classifiers. Hyperalignment aligns participants' brain activity to a common representational space to allow for comparing of similarities between participants. Between-subject multivariate decoding uses machine learning to predict what stimuli a participant is looking at based on the brain activity of other participants, here serving as a direct test for the presence of shared information across the brains of different participants. In two of the fMRI tasks, participants were presented images of four other personally familiar graduate students and four visually familiar people unknown to them. In a third task, participants watched parts of a movie. Hyperalignment and between-subject classifiers were applied to this data.

The results showed that the identity of visually familiar faces was decoded with accuracy in brain areas involved in visual processing of faces (e.g., the occipital face area and the fusiform face area). However, the identity of personally familiar faces was decoded with accuracy in brain areas involved in both visual processing and social cognition; these additional brain areas include the dorsal medial prefrontal cortex (processes other people's intentions), the precuneus (personally familiar faces), the insula (emotions), and the temporal parietal junction (social cognition, theory of mind). Stated differently, the identity of both visually and personally familiar faces could be decoded across participants from brain activity in visual areas, but only the identity of personally familiar faces could be decoded in areas involved in social cognition. One of the authors of the study remarks, “It would have been quite possible that everybody has their own private code for what people are like, but this is not the case. Our research shows that processing familiar faces really has to do with general knowledge about people.” In other words, individually distinct information about faces is encoded in brain activity that is shared across brains. The researchers next plan to investigate how shared person knowledge maps onto psychological dimensions and the role of individual differences in mapping shared representational space. First author of the study states, Our findings and methodological approach might help elucidate impairments in social interactions for some classes of disorders.

In the News
(1) Distinctive Voices Lecture: Seeing what isn't there (optical illusions)
(2) Optical illusions: colors and context
(3) Jays found to be sensitive to cognitive illusions

Friday, November 26, 2021

Drusen Formation Linked to Extracellular Vesicle Release by RPE Cells, as Potential Biomarker of AMD

Article: First Evidence Linking Extracellular Vesicles with Drusen Formation and Age-Related Macular Degeneration
Source: University of Colorado Medicine
Published: November 12, 2021

Size distribution of EVs in control (green) and CSE (red) ipRPE cells;
in CSE ipRPE cells, EVs exhibited directional release via the apical surface

Drusen are deposits that accumulate under the retina, between the retinal pigmented epithelium (RPE) and Bruch's membrane of the underlying choriocapillaris (of the choroid). The accumulation of drusen signals the, often age-related, decline in RPE function in recycling and maintaining photoreceptor health, leading to retinal diseases such as age-related macular degeneration (AMD). Researchers have for the first time observed evidence of RPE cells releasing exosomes that contain both normal proteins and proteins that are associated with drusen. This occurs in normal physiological conditions, and is increased 20 times under conditions of cellular stress. Moreover, the secretion of extracellular vesicles (EVs) by the RPE cells exhibited polarity or directionality. The authors write, "Notably, drusen-associated proteins exhibited distinctive directional secretion modes in homeostatic conditions and, differential modulation of this directional secretion in response to AMD stressors." For example, when treated with cigarette smoke extract (CSE) as a stressor and known risk factor for AMD, the RPE cells exhibited notably increased release of EVs from their apical surface compared to their basal surface. The RPE and Bruch's membrane share an apex-to-apex attachment, due to involution of the optic cup during development. The researchers suggest that these drusen-associated proteins could provide an early biomarker of AMD. First author of the study remarks, "Knowing that extracellular vesicles are releasing drusen-associated proteins presents an opportunity for novel diagnostic and therapeutical approaches. If we can define assays to measure these proteins released in these exosomes, we could potentially diagnose the disease early." Senior researcher of the project adds, "If we understand how drusen form and what cells or mechanisms contribute to their formation, we may be able to control the formation of drusen and slow down or even, perhaps prevent, some of the pathological events leading to AMD." They conclude, "Collectively, our results strongly support an active role of RPE-derived EVs as a key source of drusen proteins and important contributors to drusen development and growth."

My rating of this study:

Flores-Bellver M, Mighty J, Aparicio-Domingo S, et al. "Extracellular vesicles released by human retinal pigment epithelium mediate increased polarised secretion of drusen proteins in response to AMD stressors." Journal of Extracellular Vesicles.  10(13):e12165. 8 November 2021. https://doi.org/10.1002/jev2.12165 

Thursday, November 25, 2021

Retinoids Explored as Treatment for Usher Syndrome

Article: Retinoid Therapy May Improve Vision in People with Rare Genetic Disorder
Source: University of Maryland Medicine
Published: November 9, 2021
Article: Retinoid Therapy Improves Vision in Mice with Usher Syndrome 
Source: Genetic Engineering & Biotechnology News
Published: November 10, 2021 

The light-dark cycle proteins (purple and green) are spread
throughout the two photoreceptor compartments in eye tissue
from an Usher syndrome mouse model (right) compared to
being separated in healthy mouse eye tissue (left)
Usher syndrome type 1F (USH1F) is characterized by deafness, progressive retinal degeneration, and vestibular areflexia. Its prevalance is highest among Ashkenazi Jews, with carrier genes accounting for roughly 60% of their Usher syndrome type 1 cases. Thus far, there is no treatment for the disease. In the 2000s, a few scientists began collecting data about the natural history of USH1F disease progression, enrolling 13 participants with USH1F to follow the natural progression of their accompanying blindness over 20 or more years. This longitudinal phenotyping revealed progressive retinal degeneration leading to severe vision loss with macular atrophy by the sixth decade, with half of the individuals being legally blind by their mid-50s. Simultaneously, other scientists were working on a mouse model of an Usher syndrome variant found in 13 of the patients in the natural history project. The most recent work combined the research findings that had been independently collected in the human subjects and the mouse models. The collaboration led to new discoveries, such as identifying the function of a previously identified gene, PCDH15, that leads to a shortened version of the protein protocadherin-15 (mutation Pcdh15R250X). They found that protocadherin-15 helps light-dark cycle proteins move back and forth between the different compartments of the eye's photoreceptors, and is required in recycling of retinoids by the retinal pigmented epithelium (RPE). Reduced levels of retinoid cycle proteins (RPE65 and CRALBP) were found in mice with USH1F mutation. Next, the researchers explored whether supplementing retinoids would improve vision in these mice. They report that "[e]xogenous 9-cis retinal improved ERG amplitudes in Pcdh15R250X mice." One of the researchers remarks, "There are currently FDA-approved relatives of these retinoid drugs that are available and have passed clinical trials for safety, along with others that are in Phase II clinical trials to treat other types of vision loss disorders." They hope to test these drugs in clinical trials. Although the drugs will not recover lost vision, they might help Usher syndrome patients with function of the retinal tissue that they still have.

My rating of this study:

Sethna S, Zein WM, Riaz S, et al. “Proposed therapy, developed in a Pcdh15-deficient mouse, for progressive loss of vision in human Usher syndrome.” eLife.  10:e67361. 29 October 2021. https://doi.org/10.7554/eLife.67361

Wednesday, November 24, 2021

Eye-Tracking Software Developed for fMRI

Article: Artificial intelligence predicts eye movements 
Source: Max Planck Institute (Germany)
Published: November 8, 2021 

Viewing behavior can provide meaningful information about neurological health. As such, eye-tracking technology can be clinically relevant in the diagnosis and management of neurological injury. Typically, this eye-tracking comes in the form of sensor technology, in which infrared light is projected onto the retina, reflected, and then measured by the sensor. Although functional magnetic resonance imaging (fMRI) is the gold standard of functional brain imaging, MRIs use strong magnets and integrating MRI-compatible camera systems often comes at a high cost. This has thus far prevented the widespread use of eye-tracking in MRI exams. Researchers at the Max Planck Institute in Germany sought to improve upon eye-tracking availability by directly applying software to fMRI. These researchers developed a software called DeepMReye, a convolutional neural network (CNN) that decodes gaze position from the magnetic resonance signal of the eyeballs. Notable features of this technology include the fact that it performs cameraless eye-tracking during an fMRI scan, and works even in existing datasets and when the eyes are closed. First author of the study explains, "The neural network we use detects specific patterns in the MRI signal from the eyes. This allows us to predict where the person is looking." The software is trained on both publicly available data and study participants to now be able to perform eye-tracking on data that it was not trained on, such as existing MRI imaging that was previously acquired without eye-tracking. Because the software can predict eye movements even when the eyes are closed, it can facilitate studies of individuals in a sleeping state or of individuals who are blind. In the latter case, the researchers remark that whereas traditional eye-tracking has suffered from calibration difficulties in blind patients, "Here too, studies can be carried out more easily with DeepMReye, as the artificial intelligence can be calibrated with the help of healthy subjects and then be applied in examinations of blind patients." They have made the DeepMReye software an open source application for other researchers to use in the hopes of making eye-tracking more widespread in MRI examinations.

My rating of this study:

Frey M, Nau M and Doeller CF. "Magnetic resonance-based eye tracking using deep neural networks." Nature Neuroscience.  24:1772–1779. 8 November 2021. https://doi.org/10.1038/s41593-021-00947-w 

Tuesday, November 23, 2021

A Shared Neural Code for Recognizing Familiar Faces

Article: How Shared Neural Codes Help Us Recognize Familiar Faces
Source: Dartmouth College 
Published: November 5, 2021
Article: Brain’s Response to Familiar Faces Draws on Shared Neural Code for Visual, Social, and Semantic Processing
Source: Genetic Engineering & Biotechnology News 
Published: November 5, 2021

Neural activity in brain areas involved in social cognition
(top) and visual facial recognition (bottom)

The ability to recognize familiar faces is important in shaping social interaction. Scientists wondered whether there is a shared neural code for recognition of visually and personally familiar faces across the brains of individuals who know each other. The study recruited 14 graduate students from the same PhD program (who had known each other for at least two years) and obtained fMRI data of their brain activity in three sessions. The researchers used two methods to study face and identity perception: hyperalignment and between-subject classifiers. Hyperalignment aligns participants' brain activity to a common representational space to allow for comparing of similarities between participants. Between-subject multivariate decoding uses machine learning to predict what stimuli a participant is looking at based on the brain activity of other participants, here serving as a direct test for the presence of shared information across the brains of different participants. In two of the fMRI tasks, participants were presented images of four other personally familiar graduate students and four visually familiar people unknown to them. In a third task, participants watched parts of a movie. Hyperalignment and between-subject classifiers were applied to this data.

The results showed that the identity of visually familiar faces was decoded with accuracy in brain areas involved in visual processing of faces (e.g., the occipital face area and the fusiform face area). However, the identity of personally familiar faces was decoded with accuracy in brain areas involved in both visual processing and social cognition; these additional brain areas include the dorsal medial prefrontal cortex (processes other people's intentions), the precuneus (personally familiar faces), the insula (emotions), and the temporal parietal junction (social cognition, theory of mind). Stated differently, the identity of both visually and personally familiar faces could be decoded across participants from brain activity in visual areas, but only the identity of personally familiar faces could be decoded in areas involved in social cognition. One of the authors of the study remarks, “It would have been quite possible that everybody has their own private code for what people are like, but this is not the case. Our research shows that processing familiar faces really has to do with general knowledge about people.” In other words, individually distinct information about faces is encoded in brain activity that is shared across brains. The researchers next plan to investigate how shared person knowledge maps onto psychological dimensions and the role of individual differences in mapping shared representational space. First author of the study states, Our findings and methodological approach might help elucidate impairments in social interactions for some classes of disorders.

My rating of this study:

Visconti di Oleggio Castello M, Haxby JV and Gobbini MI. "Shared neural codes for visual and semantic information about familiar faces in a common representational space." PNAS.  118(45):e2110474118. 9 November 2021. https://doi.org/10.1073/pnas.2110474118 

Monday, November 22, 2021

Optical Illusion Combines Phi Phenomenon and Oscillating High Contrast Patterns

Article: The Circles in This Illusion Actually Aren't Changing Shape or Moving at All
Source: ScienceAlert 
Published: November 5, 2021

A new optical illusion is making its rounds for the enjoyment of netizens. The original version, which first appeared in 2020 and attributed to Japanese digital artist Jagarikin, displays a pair of rotating blue-and-yellow circles each encompassing one or four arrows that change directions, with the direction that the arrows point to influencing the perception of the forward motion of the circles. Other variations of the illusion have been created since then, including a black and white version and a version in rainbow colors. (A variation using Necker cubes also seems to be related.) The latest version in rainbow colors has been dissected by viewers to demonstrate, for example, that the illusion persists even when the arrows are removed and that the circles are indeed stationary. For cognitive—in addition to visual—entertainment, curious observers have also investigated the underlying properties that give the illusion its effect. The first is the phi phenomenon, which most of us are familiar with in the form of animated films. In its simplest instantiation, spots moving in succession in the form of a circle create the illusion of forward motion. (In a related phenomenon, called the reverse phi phenomenon, if the second point becomes light rather than dark, then we perceive the motion as moving in the opposite or reverse direction.) Other elements of the optical illusion perhaps include the Müller-Lyer illusion (as seen in a star formation here), wherein varying the direction of arrowheads influences the perception of length. (Additionally, the version in black and white seems to make use of the barberpole illusion.) And finally, it has been noted (in still frame) that each circle is flanked by inner and outer edges with colors that contrast with the body of the circle. The high contrast suggests that the subtleties of the illusion also rely on oscillating positive-negative patterns, for example as seen in two-stroke or four-stroke apparent motion. For both visual and cognitive reasons, optical illusions provide a perplexing but fun reminder of the complex, and sometimes inaccurate, ways in which our visual systems represent the world we see.

My rating of this article:

Saturday, November 20, 2021

Week in Review: Number 41

Campana Cell: a New Type of Neuron in the Retina
Scientists at Moran Eye Center at University of Utah have discovered a new type of neuron in the retina. Named the Campana cell for its bell-like shape, this interneuron possesses hybrid characteristics of both a bipolar cell and an amacrine cell, while also differing significantly from both the other types of interneurons. For example, like bipolar cells, Campana cells relay information from the photorceptors (in this case both rods and cones) to the retinal ganglion cells. Campana cells also share some features with amacrine cells, specifically Aii-ACs, such as neurite morphology in the inner plexiform layer, the expression of some AC-specific markers, and possibly the release of the inhibitory neurotransmitter glycine. However, this combination of characteristics also makes the Campana cell distinct. The lead researcher states, “Based on its morphology, physiology, and genetic properties, this cell doesn’t fit into the five classes of retinal neurons first identified more than 100 years ago. We propose they might belong to a new retinal neuron class by themselves.” Thus far, the scientists have discovered that Campana cells remain activated for an unusually long duration, as long as 30 seconds in response to a 10 millisecond light flash stimulus. The lead scientist speculates that this long duration of activation plays a role in encoding memory, similar to persistently firing neurons in the brain. The researchers conclude, "[O]ur results open the possibility for an unconventional retinal cell class that plays unique roles in visual processing."

Carbon Monoxide Explored as an Ingestable Drug Therapy for Diabetic Retinopathy
Researchers are investigating the potential of small amounts of ingested carbon monoxide to reduce oxidative stress and inflammation, both precursors to retinal diseases like diabetic retinopathy. The compound, called HBI-002, is currently in early-stage clinical trials for sickle cell disease. Although we don't often consider carbon monoxide as occurring in our bodies, tiny amounts of carbon monoxide are actually produced endogenously by own cells and tissues as an antioxidant against oxidative stress and inflammation. For example, the enzyme heme oxygenase 1, a component of hemoglobin and immune cells, releases carbon monoxide (at an amount 1,000 times lower than what we inhale from the air) to reduce oxidative stress and inflammation as part of these cells' function, naturally upregulating the enzyme when there is tissue damage. Disease states such as diabetes disturb these natural mechanisms, thereby creating environments that are more prone to oxidative stress and inflammation. So "we have to think of ways to enhance, or reestablish, those mechanisms that would normally protect us," one of the principal investigators explains. The research team has been awarded a grant to further explore HBI-002’s potential. They plan to look at how the compound works in both an ischemic model of diabetic retinopathy and a model with more natural disease progression, with the hope of finding a noninvasive therapy for diabetic retinopathy.

Preliminary tests indicate that HBI-002 can "make the trip" in oral form all the way to the retina. The carbon monoxide is ingested as a liquid and becomes the more familiar gaseous state in the intestines, a unique liquid to gas transformation. There, it naturally binds to hemoglobin and travels along blood vessels to the retina. The researchers note that HBI-002 has no trouble finding hemoglobin; in fact, it is carbon monoxide's strong affinity for hemoglobin, blocking oxygen from binding, that causes its potentially fatal effects in high amounts. Once in the cells of the retina, the carbon monoxide finds heme oxygenase 1 and helps to induce the steps that yield its antioxidant, anti-inflammatory effects. If the benefits of HBI-002 continue to hold, the researchers then plan on further studying its mechanism of action, as well as optimal dosing and frequency for the compound. The retina a part of the body that has been thus far been difficult for oral (and topical) drugs to safely target, that is, without systemic and local adverse effects. The development of a safe, ingestable treatment for diabetic retinopathy could significantly relieve the burden of invasive therapies, as well as have implications for broader applications for vascular diseases in general.

Pupils Respond to Differing Perceived Quantities
Although luminance is the main determinant of pupil size, other factors can also affect pupillary response. These include automatic responses to emotions and cognitive engagement. Scientists in Australia, with colleagues in Italy, were interested in studying whether pupils also have a physiological response to stimulus appearance and attention, that is, whether perceived numerosity modulates the pupillary light response. The study recruited 16 volunteers with normal vision who participated in a pupillometry experiment, 14 of whom participated in a numerosity discrimination experiment, and 13 of whom participated in a second pupillometry and psychophysics experiment. The perception aspects of the experiments involved tasks such as passively observing visual stimuli (black or white dots) of matched luminance but differed in their level of connectedness, whether separated dots or joined by a line, which has the illusory effect of decreasing the total number of perceived objects. The researchers also tested whether varying the relative size of the dots and the thickness of the line had any effect. The authors report, "Constriction to white arrays and dilation to black were stronger for patterns with higher perceived numerosity, either physical or illusory, with the strength of the pupillary light response scaling with the perceived numerosity of the arrays. Our results show that even without an explicit task, numerosity modulates a simple automatic reflex, suggesting that numerosity is a spontaneously encoded visual feature." One of the researchers adds that the spontaneous ability to perceive quantity, an innate "number sense," is shared among most species, with evolutionary implications such as in the perception food items or of predators.

Sinusoidal Mapping Pattern Found in V2 of the Visual Cortex of Tree Shrews
Similar to mapping the cartography of geographic space, neuroscientists who study vision map how our brain represents and makes sense of the world we see. One organizing property of the visual cortex is known as retinotopic mapping, wherein the spatial arrangement of neurons from the retina, via the optic nerve, is preserved in their spatial arrangement on the visual cortex. The prevailing theory is that the primary visual cortex (V1) follows a simple, linear pattern of roughly identical mapping of visual space represented on the cortex. However, hints of discrepancies in some studies prompted the researchers to wonder if additional patterns exist in the brain. Using a combination of single-cell functional imaging, computational modeling and connectivity studies, they uncovered such a pattern for the first time in area V2 of the tree shrew, an animal model that is amenable to research tools developed in mice (including both having a smooth brain), but is a closer relative to primates. Specifically, the researchers report that mapping of an object’s elevation, how high or low it is, followed closely with the smooth linear map found in V1, but mapping the azimuth, its horizontal position left or right of center, revealed a dramatically different sinusoidal, or oscillating pattern. One difference is that V1 is a "square" region while V2 has a thin, elongated shape. Using colored dyes to trace the connection between the two regions  confirmed that neuronal projections from V1 perfectly aligned with the sinusoidal map in V2. Furthermore, the researchers discovered that neuronal preference for certain visual features is tied directly to the retinotopic map of visual space, illustrating that the sensitivity that neurons have to particular features can vary depending on its location in visual space, that is, not only what but also where. Senior author of the study states, “Our findings open the door to a different way of thinking about how cortical circuits are organized, how they contribute to visual perception, and ultimately, behavior.”

Designing Enhanced Cinematic Experiences for Visually Impaired Audiences
In 2016, film-makers in the U.K. conducted a survey which found that 34% of visually impaired people surveyed had not attended the cinema in the previous 12 months, compared to only 5.5% of sighted people surveyed. The participants who were visually impaired reported issues of accessibility discouraging them from attending. These researchers subsequently sought to improve up on the traditional Audio Description, a third-person commentary added onto film soundtracks for visually impaired film and television audiences, to create a more inclusive film-watching experience. The Enhanced Audio Description (EAD) they developed utilizes three main techniques that focus on sound design: (1) the addition of sound effects to provide more cinematographic information about the film, such as providing information about actions, establishing shots, conveying abstract scenes, and indicating the presence of characters, time, and place; (2) the use of 3D audio over headphones to convey the position of characters and objects portrayed on the screen, and (3) the use of first-person narration to portray aspects of the story that cannot be conveyed through sound effects, e.g., feelings, gestures, and colors. This alternative soundtrack overall intended to minimize the number of verbal descriptions to avoid them masking crucial elements in the original soundtrack. They tested their EAD on a case study short film called "Pearl" thus far. They argue that the integrated approach produces an organic form of accessibility that can cater to both sighted and visually impaired audiences to promote more inclusive cinematic experiences, and can be offered alongside traditional AD for difference audience preferences. First author of the study comments, “We have sought to create a new paradigm for accessibility to film and television by shifting the focus from verbal descriptions to the power of creative sound design and the importance of incorporating accessibility to the creative filmmaking workflows. By designing such works, sound can be a vehicle for social inclusion by making cinematic experiences shared accessible experiences.”

In Other News
(1) Clinical trial of topical anti-VEGF (EXN 407) for retinal neovascular diseases
(2) U.K. launched first eye clinic for people with Down's syndrome
(3) Colorblind fish reveal the evolution of vision
(4) Eyes reveal the life history of fish

Friday, November 19, 2021

Carbon Monoxide in Tiny Doses Explored as an Ingestable Drug Therapy for Diabetic Retinopathy

Article: Small amounts of carbon monoxide may help protect vision in diabetes
Source: Augusta University, Medical College of Georgia
Published: November 4, 2021

Researchers are investigating the potential of small amounts of ingested carbon monoxide to reduce oxidative stress and inflammation, both precursors to retinal diseases like diabetic retinopathy. The compound, called HBI-002, is currently in early-stage clinical trials for sickle cell disease. Although we don't often consider carbon monoxide as occurring in our bodies, tiny amounts of carbon monoxide are actually produced endogenously by own cells and tissues as an antioxidant against oxidative stress and inflammation. For example, the enzyme heme oxygenase 1, a component of hemoglobin and immune cells, releases carbon monoxide (at an amount 1,000 times lower than what we inhale from the air) to reduce oxidative stress and inflammation as part of these cells' function, naturally upregulating the enzyme when there is tissue damage. Disease states such as diabetes disturb these natural mechanisms, thereby creating environments that are more prone to oxidative stress and inflammation. So "we have to think of ways to enhance, or reestablish, those mechanisms that would normally protect us," one of the principal investigators explains. The research team has been awarded a grant to further explore HBI-002’s potential. They plan to look at how the compound works in both an ischemic model of diabetic retinopathy and a model with more natural disease progression, with the hope of finding a noninvasive therapy for diabetic retinopathy.

Preliminary tests indicate that HBI-002 can "make the trip" in oral form all the way to the retina. The carbon monoxide is ingested as a liquid and becomes the more familiar gaseous state in the intestines, a unique liquid to gas transformation. There, it naturally binds to hemoglobin and travels along blood vessels to the retina. The researchers note that HBI-002 has no trouble finding hemoglobin; in fact, it is carbon monoxide's strong affinity for hemoglobin, blocking oxygen from binding, that causes its potentially fatal effects in high amounts. Once in the cells of the retina, the carbon monoxide finds heme oxygenase 1 and helps to induce the steps that yield its antioxidant, anti-inflammatory effects. If the benefits of HBI-002 continue to hold, the researchers then plan on further studying its mechanism of action, as well as optimal dosing and frequency for the compound. The retina a part of the body that has been thus far been difficult for oral (and topical) drugs to safely target, that is, without systemic and local adverse effects. The development of a safe, ingestable treatment for diabetic retinopathy could significantly relieve the burden of invasive therapies, as well as have implications for broader applications for vascular diseases in general.

My rating of this article:  

Thursday, November 18, 2021

Designing Enhanced Cinematic Experiences for Visually Impaired Audiences

Article: Researchers develop new methods to enhance film experience for visually impaired audiences
Source: University of York (U.K.)
Published: November 1, 2021 

In 2016, film-makers in the U.K. conducted a survey which found that 34% of visually impaired people surveyed had not attended the cinema in the previous 12 months, compared to only 5.5% of sighted people surveyed. The participants who were visually impaired reported issues of accessibility discouraging them from attending. These researchers subsequently sought to improve up on the traditional Audio Description, a third-person commentary added onto film soundtracks for visually impaired film and television audiences, to create a more inclusive film-watching experience. The Enhanced Audio Description (EAD) they developed utilizes three main techniques that focus on sound design: (1) the addition of sound effects to provide more cinematographic information about the film, such as providing information about actions, establishing shots, conveying abstract scenes, and indicating the presence of characters, time, and place; (2) the use of 3D audio over headphones to convey the position of characters and objects portrayed on the screen, and (3) the use of first-person narration to portray aspects of the story that cannot be conveyed through sound effects, e.g., feelings, gestures, and colors. This alternative soundtrack overall intended to minimize the number of verbal descriptions to avoid them masking crucial elements in the original soundtrack. They tested their EAD on a case study short film called "Pearl" thus far. They argue that the integrated approach produces an organic form of accessibility that can cater to both sighted and visually impaired audiences to promote more inclusive cinematic experiences, and can be offered alongside traditional AD for difference audience preferences. First author of the study comments, “We have sought to create a new paradigm for accessibility to film and television by shifting the focus from verbal descriptions to the power of creative sound design and the importance of incorporating accessibility to the creative filmmaking workflows. By designing such works, sound can be a vehicle for social inclusion by making cinematic experiences shared accessible experiences.”

My rating of this study:

Lopez M, Kearney G and Hofstadter K. “Enhancing Audio Description: Inclusive Cinematic Experiences Through Sound Design.” Journal of Audiovisual Translation.  4(1):157-182. 29 October 2021. https://doi.org/10.47476/jat.v4i1.2021.154 

Wednesday, November 17, 2021

Campana Cell: a New Type of Neuron in the Retina

Article: Researchers Discover New Type of Nerve Cell in the Retina
Source: University of Utah Medicine
Published: October 28, 2021 

Scientists at Moran Eye Center at University of Utah have discovered a new type of neuron in the retina. Named the Campana cell for its bell-like shape, this interneuron possesses hybrid characteristics of both a bipolar cell and an amacrine cell, while also differing significantly from both the other types of interneurons. For example, like bipolar cells, Campana cells relay information from the photorceptors (in this case both rods and cones) to the retinal ganglion cells. Campana cells also share some features with amacrine cells, specifically Aii-ACs, such as neurite morphology in the inner plexiform layer, the expression of some AC-specific markers, and possibly the release of the inhibitory neurotransmitter glycine. However, this combination of characteristics also makes the Campana cell distinct. The lead researcher states, “Based on its morphology, physiology, and genetic properties, this cell doesn’t fit into the five classes of retinal neurons first identified more than 100 years ago. We propose they might belong to a new retinal neuron class by themselves.” Thus far, the scientists have discovered that Campana cells remain activated for an unusually long duration, as long as 30 seconds in response to a 10 millisecond light flash stimulus. The lead scientist speculates that this long duration of activation plays a role in encoding "memory," similar to persistently firing neurons in the brain. The researchers conclude, "[O]ur results open the possibility for an unconventional retinal cell class that plays unique roles in visual processing."

My rating of this study: 🌸

Young BK, Ramakrishnan C, Ganjawala T, et al. "An uncommon neuronal class conveys visual signals from rods and cones to retinal ganglion cells." PNAS.  118(44):e2104884118. 2 November 2021. https://doi.org/10.1073/pnas.2104884118

Tuesday, November 16, 2021

Sinusoidal Mapping Pattern Found in V2 of the Visual Cortex of Tree Shrews

Article: Cartography of the Visual Cortex: Charting a New Course for the Organization of Visual Space 
Source: Max Planck Florida Institute for Neuroscience
Published: October 26, 2021 

Sinusoidal transformation corresponding to the azimuth (left/right)
axis of the visual field and its mapping onto V2 of the visual cortex
 

Similar to mapping the cartography of geographic space, neuroscientists who study vision map how our brain represents and makes sense of the world we see. One organizing property of the visual cortex is known as retinotopic mapping, wherein the spatial arrangement of neurons from the retina, via the optic nerve, is preserved in their spatial arrangement on the visual cortex. The prevailing theory is that the primary visual cortex (V1) follows a simple, linear pattern of roughly identical mapping of visual space represented on the cortex. However, hints of discrepancies in some studies prompted the researchers to wonder if additional patterns exist in the brain. Using a combination of single-cell functional imaging, computational modeling and connectivity studies, they uncovered such a pattern for the first time in area V2 of the tree shrew, an animal model that is amenable to research tools developed in mice (including both having a smooth brain), but is a closer relative to primates. Specifically, the researchers report that mapping of an object’s elevation, how high or low it is, followed closely with the smooth linear map found in V1, but mapping the azimuth, its horizontal position left or right of center, revealed a dramatically different sinusoidal, or oscillating pattern. One difference is that V1 is a "square" region while V2 has a thin, elongated shape. Using colored dyes to trace the connection between the two regions  confirmed that neuronal projections from V1 perfectly aligned with the sinusoidal map in V2. Furthermore, the researchers discovered that neuronal preference for certain visual features is tied directly to the retinotopic map of visual space, illustrating that the sensitivity that neurons have to particular features can vary depending on its location in visual space, that is, not only what but also where. Senior author of the study states, “Our findings open the door to a different way of thinking about how cortical circuits are organized, how they contribute to visual perception, and ultimately, behavior.”

My rating of this study:

Sedigh-Sarvestani M, Lee K, Jaepel J, et al. "A sinusoidal transformation of the visual field is the basis for periodic maps in area V2." Neuron.  109(24):4068-4079.e6. 15 December 2021. https://doi.org/10.1016/j.neuron.2021.09.053 

Monday, November 15, 2021

Pupils Respond to Differing Perceived Quantities

Article: More than light detectors: the magic of your eyes' pupils 
Source: University of Sydney (Australia)
Published: October 25, 2021 
Article: The Pupil in Your Eye Can Perceive Numerical Information, Not Just Light
Source: ScienceAlert
Published: October 27, 2021

Experiments tested participants' pupillary responses to differing
perceived quantity (left) and stimulus connectedness (right)
Although luminance is the main determinant of pupil size, other factors can also affect pupillary response. These include automatic responses to emotions and cognitive engagement. Scientists in Australia, with colleagues in Italy, were interested in studying whether pupils also have a physiological response to stimulus appearance and attention, that is, whether perceived numerosity modulates the pupillary light response. The study recruited 16 volunteers with normal vision who participated in a pupillometry experiment, 14 of whom participated in a numerosity discrimination experiment, and 13 of whom participated in a second pupillometry and psychophysics experiment. The perception aspects of the experiments involved tasks such as passively observing visual stimuli (black or white dots) of matched luminance but differed in their level of connectedness, whether separated dots or joined by a line, which has the illusory effect of decreasing the total number of perceived objects. The researchers also tested whether varying the relative size of the dots and the thickness of the line had any effect. The authors report, "Constriction to white arrays and dilation to black were stronger for patterns with higher perceived numerosity, either physical or illusory, with the strength of the pupillary light response scaling with the perceived numerosity of the arrays. Our results show that even without an explicit task, numerosity modulates a simple automatic reflex, suggesting that numerosity is a spontaneously encoded visual feature." One of the researchers adds that the spontaneous ability to perceive quantity, an innate "number sense," is shared among most species, with evolutionary implications such as in the perception food items or of predators.

My rating of this study:

Castaldi E, Pomè A, Cicchini GM, et al. "The pupil responds spontaneously to perceived numerosity." Nature Communications.  12:5944. 12 October 2021. https://doi.org/10.1038/s41467-021-26261-4

Saturday, November 13, 2021

Week in Review: Number 40

Brain Implant Furthers Progress in Artificial Vision
The Moran|Cortivis Prosthesis is a visual prosthesis that combines a small brain implant with a specialized eyeglass-mounted video camera, which captures images to send to the implant. The implant itself, called the Utah Electrode Array (UEA), is a 4x4 mm microelectrode array composed of 96 microneedles, each 1.5 mm in length, which penetrate the surface of visual cortex to both record and stimulate the electrical activity of neurons. Eyeglasses equipped with a miniature video camera and specialized software encode the visual information collected by the camera and send it to the electrodes to produce a simple form of vision through phosphenes, or flashes of light. Depending on the strength of the stimulation, the phosphenes could be brighter or more faded, a white color or a sepia tone. Depending on the spatial arrangement (e.g., the distance between stimulated electrodes), the phosphenes could be perceived as rounded or elongated. Simultaneously stimulating multiple electrodes produced easier perception. This proof-of-concept has been tested for the first time in the visual cortex of Berna Gómez, a 60-year-old volunteer in Elche, Spain, who at the time of the study had been completely blind for 16 years due to an incidence of toxic optic neuropathy. With the prosthesis, Gómez was able to identify the edges of simple high-contrast shapes and perceive simple letters (specifically I, L, C, V, and O) evoked by different patterns of stimulation (up to 16 electrodes). At the end of the 6-month trial, the device was surgically removed, and the researchers report no complications following its removal, nor observed any impairment to the function of neurons in close proximity to the electrodes or to the function of the underlying cortex. The researchers estimate that between 7 and 10 UEAs (roughly 700 electrodes) could provide enough information to give a blind person a level of useful mobility, though further studies are needed to determine how long the implants are effective and can safely remain in the brain. A clinical trial of the device involving up to four other participants is scheduled to continue into 2024. In the next set of experiments, the researchers will use a more sophisticated image encoder system capable of stimulating more electrodes simultaneously to elicit more complex visual images.

This project furthers what the researchers say is a "long-held dream of scientists," to impart a rudimentary form of sight to blind people by sending information directly to the brain's visual cortex. In doing so, they hope to confer a greater degree of mobility, independence, and safety to people who are blind. One of the senior investigators states, “[A]lthough these preliminary results are very encouraging, we should be aware that there are still a number of important unanswered questions and that many problems have to be solved before a cortical visual prosthesis can be considered a viable clinical therapy.” For her clinically precise feedback and importance to the research, the subject and former science teacher is listed as a co-author of the study.

Fluoxetine as a Potential Treatment for Atrophic AMD
Related to research by Jayakrishna Ambati, M.D., at University of Virginia, colleagues at the same institution are exploring drug repurposing in the treatment of eye diseases such as atrophic age-related macular degeneration (AMD), also known as geographic atrophy. In this case, the research team is examining the therapeutic potential of fluoxetine (Prozac), an FDA-approved medication for clinical depression. The investigators explain, “Traditional approaches to drug development can be expensive and time-consuming: On average, a new FDA-approved drug takes 10-12 years and costs $2.8 billion (present-day dollars) to develop. Our identification of the unrecognized therapeutic activity of an existing FDA-approved drug using big data mining, coupled with demonstrating its efficacy in a disease-relevant model, could greatly accelerate and reduce the cost of drug development.” In particular, they tested fluoxetine and eight other antidepressant drugs in mouse models of Alu RNA-induced AMD, and note that fluoxetine, but not the other antidepressants, was effective at slowing the progression of the disease. They report that fluoxetine acts as a direct inhibitor of the inflammasome (components NLRP and ASC from assembling) in silico, in vitro, and in vivo to prevent the cytokine release that ultimately leads to retinal pigmented epithelium (RPE) and retinal degeneration. Next, the researchers applied big data mining to two large health insurance databases, together encompassing more than 100 million Americans, to determine any associations. The analysis showed "a reduced hazard of developing dry AMD among patients with depression who were treated with fluoxetine." Senior author of the study remarks, “[W]e may have only begun to scratch the surface of finding new uses for old drugs. It is tempting to think about all the untapped therapeutic potential of medicines sitting on pharmacy shelves...Ultimately, the best way to test whether fluoxetine benefits macular degeneration is to run a prospective clinical trial.”

Pupils Reveal Strong Engagement with Metaphor
Eyes are the windows to the soul, capturing and relaying information about our inner thoughts and emotions. This subtle expression of engagement can nonetheless be seen through tell-tale reactions of our pupils. As an offshoot of previous work wherein functional magnetic resonance imaging (fMRI) of the amydala, considered the emotional center of our brains, was found to respond more to metaphors than to literal language, a group of scientists sought to further explore our response to metaphors through pupillometry. The latter method also allows for "tighter time controls," as pupils respond in a fraction of a second. Then undergraduate student and first author of the study explains, “We saw over and over again that when our subjects reached the metaphorical part of the sentence, that split second was when the pupils dilated.” Furthermore, the pupils remained dilated for a couple of seconds, suggesting heightened engagement. In the present study, the researchers wanted to tease apart the relationship beyond merely the difference between a common metaphor ("grasping an idea") and a literal paraphrase ("understanding an idea"), so they added a third category representing a concrete description ("grasp a rail"), which uses the same key words in a purely literal way. They then created a database of 180 sentences/phrases, 60 in each category, and placed them through a rigorous norming process for familiarity, complexity, intensity, plausibility and positivity. The database is made publicly available for other researchers. Survey data from the norming process indicated that when metaphorical and literal sentences were compared directly, participants judged metaphorical sentences to be significantly more emotional and convey richer meaning, but were not considered more informative. They report that initial intentions to disentangle the emotional and the cognitive aspects of response to metaphor have proven difficult. Senior author of the study comments that, similar to amygdala response, “Pupils likewise dilate in response to both emotional engagement or cognitive engagement. In fact, we’re hard pressed to come up with a dependent measure that doesn’t react to both.” They nonetheless conclude that conventional metaphors are more engaging than literal paraphrases or concrete sentences, which we should not shy away from.

Beacon Molecule Nephronectin Guides Optic Nerve Cells to the Superior Colliculus
The superior colliculi (SC) are a pair of eminences at the "roof" of the midbrain where visual, auditory, and somatosensory information are integrated to initiate and coordinate movement. This brain region plays a central role in visual processing, receiving binocular input from 85-90% of retinal ganglion cells (as studied in the mouse brain), and projecting output signals to a variety of motor control centers in the cerebrum. The SC's processing capability stems from the precise organization of its cellular layers to refine signaling patterns. Neuroscientists are studying how axons from the eyes migrate during early brain development to form the optic nerve, including extending to regions such as the superior colliculus, in the hopes of identifying new ways to regenerate injured optic nerve fibers. Senior investigator of the study states, “If our goal is to one day regenerate damaged brain circuits to restore vision, then first we need to know how to get the cell’s axons to grow into a precise destination in the brain.” In particular, his team looked at how a specific subtype of optic nerve cells, ipsilateral retinal ganglion cells (ipsiRGCs), find their way to the superior colliculus during brain development. Using a viral tag, they identified two chaperon proteins that guide the circuit formation. One protein, a beacon molecule called nephronectin emitted by a type of excitatory neuron in the superior colliculus, attracts the optic nerve cells. Once the migrating cell has moved to the right location, nephronectin docks with a receptor protein on the migrating cell's membrane, telling the cell that it has reach its destination. Absence of nephronectin in mouse models results in the superior colliculus's visual layer not forming properly. The superior colliculus in the human brain occupies less relative volume, though it is also thought to play a role in "stabilizing our image of a moving world by controlling head, neck, and eye movements." Nonetheless, because the superior colliculus is present in all mammals, study of the signaling mechanisms that guide axons of different types of retinal neurons into segregated layers of brain regions provides a better understanding of the organizing principles of the visual system's segregated, parallel pathways.

Diverse Genome-Wide Study of IRD Lineages
Inherited retinal diseases (IRD) are a diverse group of pathologies resulting from genetic mutations. Examples include retinal dystrophies such as retinitis pigmentosa, Leber congenital amaurosis, choroideremia, and ocular albinism. It is estimated that at least 260 different gene variants contribute to IRD etiologies. Although rare, IRDs affect people of all ages, with few, if any, treatment options. An international team of scientists led by researchers at UCSD are studying how inherited retinal dystrophies affect different populations of people and, in doing so, have also identified new causative gene variants. The researchers conducted whole-genome sequences (WGS) of 409 individuals from 108 unrelated family lineages (pedigrees), each with a previously diagnosed IRD. Genetic analysis, at a minimum of 30X depth, included linkage analysis and exome sequencing, which had not been performed in earlier gene sequencing of these 108 pedigrees. The study participants were recruited from three ethnic and geographic backgrounds, two of which from understudied populations: Mexico, Pakistan, and European American living in the U.S. Genomic analysis from blood samples revealed causative variants in 61 of the 108 pedigrees (57%), with a total of 93 causative variants in those 61 families. Among the 93 causative variants, 39 were newly reported. The authors note that more than half of the new variants were not listed in the Genome Aggregation Database (gnomAD), an international compilation of genomic data. Clinical diagnosis was consistent with 57 of the pedigrees, and 4 of the pedigrees were reclassified by the researchers. The whole-genome sequencing also identified "unexpected" genotypes specific to the study population, including 4 pedigrees carrying more than one IRD gene among all affected family members, one pedigree wherein different family members carried causal variants in different IRD genes, and one de-novo mutation. Taken together, the study revealed a variety of IRD variants and "shed light on the genetic architecture of IRD in these diverse global populations."

In Other News

(1) Judge David Tatel's experience with blindness
(2) NEI Audacious Goals Initiative to regenerate neurons in the visual system
(3) UCLA team awarded $1 million grant to treat rare melanomas (Related)

Friday, November 12, 2021

Brain Implant Furthers Progress in Artificial Vision

Article: Scientists Enable Blind Woman To See Simple Shapes Using Brain Implant
Source: University of Utah Health
Article: Moran Eye Center, Spanish Researchers Successfully Test Artificial Vision for the Blind
Source: University of Utah Health
Article: Scientists enable a blind woman to see simple shapes using a brain implant
Source: Netherlands Institute for Neuroscience (Netherlands)
Published: October 20, 2021

UEA implantation and electrophysiological recordings
The Moran|Cortivis Prosthesis is a visual prosthesis that combines a small brain implant with a specialized eyeglass-mounted video camera, which captures images to send to the implant. The implant itself, called the Utah Electrode Array (UEA), is a 4x4 mm microelectrode array composed of 96 microneedles, each 1.5 mm in length, which penetrate the surface of visual cortex to both record and stimulate the electrical activity of neurons. Eyeglasses equipped with a miniature video camera and specialized software encode the visual information collected by the camera and send it to the electrodes to produce a simple form of vision through phosphenes, or flashes of light. Depending on the strength of the stimulation, the phosphenes could be brighter or more faded, a white color or a sepia tone. Depending on the spatial arrangement (e.g., the distance between stimulated electrodes), the phosphenes could be perceived as rounded or elongated. Simultaneously stimulating multiple electrodes produced easier perception. This proof-of-concept has been tested for the first time in the visual cortex of Berna Gómez, a 60-year-old volunteer in Elche, Spain, who at the time of the study had been completely blind for 16 years due to an incidence of toxic optic neuropathy. With the prosthesis, Gómez was able to identify the edges of simple high-contrast shapes and perceive simple letters (specifically I, L, C, V, and O) evoked by different patterns of stimulation (up to 16 electrodes). At the end of the 6-month trial, the device was surgically removed, and the researchers report no complications following its removal, nor observed any impairment to the function of neurons in close proximity to the electrodes or to the function of the underlying cortex. The researchers estimate that between 7 and 10 UEAs (roughly 700 electrodes) could provide enough information to give a blind person a level of useful mobility, though further studies are needed to determine how long the implants are effective and can safely remain in the brain. A clinical trial of the device involving up to four other participants is scheduled to continue into 2024. In the next set of experiments, the researchers will use a more sophisticated image encoder system capable of stimulating more electrodes simultaneously to elicit more complex visual images.

This project furthers what the researchers say is a "long-held dream of scientists," to impart a rudimentary form of sight to blind people by sending information directly to the brain's visual cortex. In doing so, they hope to confer a greater degree of mobility, independence, and safety to people who are blind. One of the senior investigators states, “[A]lthough these preliminary results are very encouraging, we should be aware that there are still a number of important unanswered questions and that many problems have to be solved before a cortical visual prosthesis can be considered a viable clinical therapy.” For her clinically precise feedback and importance to the research, the subject and former science teacher is listed as a co-author of the study.

My rating of this study:

Fernández E, Alfaro A, Soto-Sánchez C, et al. "Visual percepts evoked with an intracortical 96-channel microelectrode array inserted in human occipital cortex." Journal of Clinical Investigation.  131(23):e151331. 19 October 2021. https://doi.org/10.1172/JCI151331

Additional reference articles
:
Article: Scientists used a tiny brain implant to help a blind teacher see letters again
Source: NPR
Published: October 23, 2021
Article: Prosthetic Device Partially Restores Blind Biology Teacher’s Vision 
Source: The Scientist
Published: October 26, 2021
Article: Brain Implant Gives Blind Woman Artificial Vision in Scientific First
Source: ScienceAlert
Published: October 28, 2021